
Eli Lilly and Company, doing business as Lilly, is an American multinational pharmaceutical company headquartered in Indianapolis, Indiana, with offices in 18 countries
Associate Director: Data Engineering Lead - LillyDirect Platform at Eli Lilly
About the role
At Lilly, we unite caring with discovery to make life better for people around the world. We are a global healthcare leader headquartered in Indianapolis, Indiana. Our employees around the world work to discover and bring life-changing medicines to those who need them, improve the understanding and management of disease, and give back to our communities through philanthropy and volunteerism. We give our best effort to our work, and we put people first. We’re looking for people who are determined to make life better for people around the world.
Associate Director – Data Engineering Lead - Lilly Direct Platform Responsibilities
You will join a growing team of business intelligence and analytics professionals focused on Lilly's first-party patient data initiatives. The Associate Director – Patient Data Engineering Lead will own the data engineering foundation for Lilly Direct, Lilly's direct-to-patient pharmacy platform.
This role is responsible for designing and delivering patient analytics data products that span prescription initiation, dispensing fulfillment, and end-to-end patient journey analytics — integrating Lilly Direct data flows into the broader consumer first-party data ecosystem. A critical dimension of this role is ensuring HIPAA authorization and SPI (Sensitive Personal Information) consent governance: from consent capture and preference center architecture to enterprise-level revocation propagation across integrated systems and intake pharmacy partners.
You will build scalable ingestion pipelines for pharmacy partner data, implement tokenization and identity resolution for linked patient analytics, and deliver semantic layers that enable downstream BI, reporting, and agentic AI use cases.
This position works closely with the Lilly Direct product team, intake pharmacy partners, the consumer first party data platform team, and BIA platform enablement — translating patient analytics requirements into governed, scalable, privacy-first implementations.
The ideal candidate combines deep data engineering expertise with a strong command of healthcare privacy regulations and a passion for enabling trusted patient analytics at enterprise scale. This position works with the Sr. Director – Consumer Data Engineering.
Key Objectives:
- Lead the design, development, and delivery of patient analytics data products supporting Lilly Direct pharmacy: patient journey tracking, prescription initiation, dispensing fulfillment, and program engagement analytics.
- Integrate Lilly Direct data flows into the consumer first-party data ecosystem, ensuring patient analytics align with and extend the broader consumer engagement platform and 1PD data standards.
- Architect HIPAA-compliant data infrastructure for the Lilly Direct platform — including HIPAA authorization capture, SPI consent management, enterprise vs. Lilly Direct consent scoping, and revocation propagation across all integrated systems and journeys.
- Design and implement tokenization and identity resolution pipelines linking prescription, dispensing, and intake pharmacy partner data to enable end-to-end, privacy-governed patient journey analytics.
- Build scalable, reliable data ingestion pipelines for pharmacy partner data (C5/LDP, intake pharmacy feeds); define data quality standards and validation processes for enterprise-scale patient datasets.
- Deliver semantic layers and analytics-ready data products — curated datasets, data dictionaries, and governed access patterns enabling downstream BI reporting, self-service analytics, and agentic AI use cases.
- Govern data access and privacy controls in coordination with legal, cyber, and privacy teams; own data recertification milestones, Reltio/Cassie integrations, and consent scoping decisions.
- Collaborate closely with multi-functional teams — Lilly Direct product team, intake pharmacy partners, consumer 1PD analytical platform team, and BIA platform enablement — to translate business requirements into technical specifications and deliver governed, high-quality data products.
Basic Qualifications
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Bachelor's and/or Master's Degree in Computer Science, Engineering, Statistics, Information Technology, Information Management,
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5+ years of experience in data engineering, with a focus on developing data products and solutions in healthcare, pharma, or similarly regulated environments.
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5+ years of expertise in SQL, Python
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5+ years of hands-on experience with cloud-native data engineering tools (ex. Databricks, Delta Lake, Apache Spark) and enterprise data warehouse platforms (ex. Snowflake, Redshift, or equivalent), with exposure to large-scale patient or clinical datasets.
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Experience with cloud platforms such as AWS or Azure
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Qualified applicants must be authorized to work in the United States on a full-time basis. Lilly will not provide support for or sponsor work authorization or visas for this role, including but not limited to F-1 CPT, F-1 OPT, F-1 STEM OPT, J-1, H-1B, TN, O-1, E-3, H-1B1, or L-1
Additional Information
- 0-25% travel depending on business need
Additional Skills/Preferences
- Experience designing and executing data ingestion pipelines for complex, multi-source data environments.
- Solid understanding of data modeling and database design.
- Knowledge of HIPAA regulations and healthcare data privacy requirements; experience with consent management or SPI governance frameworks preferred.
- Familiarity with patient data models such as OMOP/Common Data Model or equivalent preferred.
- Experience with patient analytics or healthcare data ecosystems: prescription, dispensing, intake pharmacy, or medical claims data.
- Deep understanding of HIPAA authorization frameworks, SPI consent management, and consent revocation propagation across integrated systems and CRM/marketing platforms.
- Tokenization and identity resolution experience for linking first-party and third-party patient data at enterprise scale.
- Semantic modeling and data dictionary development experience (Power BI, Microsoft Fabric, or equivalent BI platforms).
- Familiarity with Databricks Unity Catalog, Delta Lake, and lakehouse architecture patterns.
- Consistent record of leading complex, multi-stakeholder data engineering projects in regulated or compliance-driven environments.
- Knowledge of DevOps practices and CI/CD tools; GitHub-based version control and analytics scripting workflows.
- Experience with Agile/Scrum methodologies and project management tools such as JIRA.
- Ability to bridge technical and non-technical stakeholders, translating patient analytics requirements into scalable, privacy-first technical implementations
Lilly is dedicated to helping individuals with disabilities to actively engage in the workforce, ensuring equal opportunities when vying for positions. If you require accommodation to submit a resume for a position at Lilly, please complete the accommodation request form (https://careers.lilly.com/us/en/workplace-accommodation) for further assistance. Please note this is for individuals to request an accommodation as part of the application process and any other correspondence will not receive a response.
Lilly is proud to be an EEO Employer and does not discriminate on the basis of age, race, color, religion, gender identity, sex, gender expression, sexual orientation, genetic information, ancestry, national origin, protected veteran status, disability, or any other legally protected status.
Our employee resource groups (ERGs) offer strong support networks for their members and are open to all employees. Our current groups include: Africa, Middle East, Central Asia Network, Black Employees at Lilly, Chinese Culture Network, Japanese International Leadership Network (JILN), Lilly India Network, Organization of Latinx at Lilly (OLA), PRIDE (LGBTQ+ Allies), Veterans Leadership Network (VLN), Women’s Initiative for Leading at Lilly (WILL), en Able (for people with disabilities). Learn more about all of our groups.
Actual compensation will depend on a candidate’s education, experience, skills, and geographic location. The anticipated wage for this position is
$132,000 - $193,600
Full-time equivalent employees also will be eligible for a company bonus (depending, in part, on company and individual performance). In addition, Lilly offers a comprehensive benefit program to eligible employees, including eligibility to participate in a company-sponsored 401(k); pension; vacation benefits; eligibility for medical, dental, vision and prescription drug benefits; flexible benefits (e.g., healthcare and/or dependent day care flexible spending accounts); life insurance and death benefits; certain time off and leave of absence benefits; and well-being benefits (e.g., employee assistance program, fitness benefits, and employee clubs and activities).Lilly reserves the right to amend, modify, or terminate its compensation and benefit programs in its sole discretion and Lilly’s compensation practices and guidelines will apply regarding the details of any promotion or transfer of Lilly employees.
#We Are Lilly
Required skills
Data engineering
ETL pipelines
HIPAA compliance
Consent governance
Data architecture
Analytics engineering
Leadership
Cross-functional collaboration
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About Eli Lilly

Eli Lilly
PublicEli Lilly and Company, doing business as Lilly, is an American multinational pharmaceutical company headquartered in Indianapolis, Indiana, with offices in 18 countries. Its products are sold in approximately 125 countries.
10,001+
Employees
US: USA Remote
Headquarters
$588B
Valuation
Reviews
10 reviews
3.8
10 reviews
Work-life balance
3.2
Compensation
4.1
Culture
3.7
Career
2.8
Management
3.9
72%
Recommend to a friend
Pros
Excellent compensation and benefits
Supportive management and leadership
Flexible work arrangements
Cons
Limited career advancement opportunities
High stress and demanding workload
Fast-paced and high-pressure environment
Salary Ranges
56 data points
Mid/L4
Senior/L5
Mid/L4 · Advisor - Research - Statistics
1 reports
$167,900
total per year
Base
$146,000
Stock
-
Bonus
-
$167,900
$167,900
Interview experience
2 interviews
Difficulty
2.5
/ 5
Duration
14-28 weeks
Offer rate
100%
Experience
Positive 50%
Neutral 50%
Negative 0%
Interview process
1
Application Review
2
HR Screen
3
Phone/Video Interview
4
Hiring Manager Interview
5
Final Interview/Panel
6
Offer
Common questions
Behavioral/STAR
Past Experience
Culture Fit
Industry Knowledge
Technical Knowledge
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